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Adding recommended parameters for 3' tag RNA-seq (e.g. QuantSeq) data #928

Merged
merged 5 commits into from
Jan 19, 2023
Merged

Adding recommended parameters for 3' tag RNA-seq (e.g. QuantSeq) data #928

merged 5 commits into from
Jan 19, 2023

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tomsing1
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This proposed section for the documentation provides parameters for the QuantSeq FWD 3' mRNA sequencing protocol. I have added a markdown section to usage.md.

  • This comment contains a description of changes (with reason).

drpatelh and others added 3 commits December 21, 2022 13:48
@drpatelh
Merge pull request nf-core#914 from nf-core/dev
adce7ce 
Dev -> Master for v3.10 release
@drpatelh
Merge pull request nf-core#923 from nf-core/dev
6e1e448 
Dev -> Master for 3.10.1 release
@tomsing1
Added 3′ digital gene expression assays section
da6233b 
This proposed section provides parameters for the QuantSeq FWD 3' mRNA sequencing protocol.
drpatelh
drpatelh reviewed Jan 19, 2023
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drpatelh
drpatelh reviewed Jan 19, 2023
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drpatelh
drpatelh approved these changes Jan 19, 2023
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Thanks @tomsing1 ! Added you to the nf-core Github org too 🚀

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@nf-core-bot fix linting

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github-actions bot commented Jan 19, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 8000e0c

+| ✅ 153 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   2 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: '3.10.1'
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/email_template.html
  • files_unchanged - File ignored due to lint config: assets/email_template.txt
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-01-19 13:30:11

@drpatelh drpatelh merged commit a5ebd3e into nf-core:dev Jan 19, 2023
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@tomsing1 @drpatelh @nf-core-bot